Pandas Profiling Report

Dataset statistics

Number of variables	16
Number of observations	4262
Missing cells	4
Missing cells (%)	< 0.1%
Duplicate rows	0
Duplicate rows (%)	0.0%
Total size in memory	532.9 KiB
Average record size in memory	128.0 B

Variable types

Categorical	1
Numeric	15

Alerts

`begin` is highly correlated with `end`	High correlation
`end` is highly correlated with `begin`	High correlation
`length_gene` is highly correlated with `per_gene`	High correlation
`length_rpt` is highly correlated with `length_LINE` and 6 other fields	High correlation
`length_LINE` is highly correlated with `length_rpt` and 3 other fields	High correlation
`length_SINE` is highly correlated with `length_rpt` and 4 other fields	High correlation
`length_DNA` is highly correlated with `per_DNA` and 2 other fields	High correlation
`length_LTR` is highly correlated with `length_rpt` and 3 other fields	High correlation
`per_DNA` is highly correlated with `length_DNA` and 2 other fields	High correlation
`per_SINE` is highly correlated with `length_rpt` and 6 other fields	High correlation
`per_LTR` is highly correlated with `length_rpt` and 8 other fields	High correlation
`per_LINE` is highly correlated with `length_rpt` and 6 other fields	High correlation
`per_length` is highly correlated with `length_rpt` and 6 other fields	High correlation
`per_gene` is highly correlated with `length_gene`	High correlation
`begin` is highly correlated with `end`	High correlation
`end` is highly correlated with `begin`	High correlation
`length_gene` is highly correlated with `per_gene`	High correlation
`length_rpt` is highly correlated with `length_LINE` and 5 other fields	High correlation
`length_LINE` is highly correlated with `length_rpt` and 2 other fields	High correlation
`length_SINE` is highly correlated with `per_SINE` and 1 other fields	High correlation
`length_DNA` is highly correlated with `per_DNA` and 2 other fields	High correlation
`length_LTR` is highly correlated with `length_rpt` and 3 other fields	High correlation
`per_DNA` is highly correlated with `length_DNA` and 2 other fields	High correlation
`per_SINE` is highly correlated with `length_rpt` and 4 other fields	High correlation
`per_LTR` is highly correlated with `length_rpt` and 7 other fields	High correlation
`per_LINE` is highly correlated with `length_rpt` and 4 other fields	High correlation
`per_length` is highly correlated with `length_rpt` and 4 other fields	High correlation
`per_gene` is highly correlated with `length_gene`	High correlation
`begin` is highly correlated with `end` and 1 other fields	High correlation
`end` is highly correlated with `begin` and 1 other fields	High correlation
`length_gene` is highly correlated with `block_len` and 1 other fields	High correlation
`length_rpt` is highly correlated with `length_LINE` and 4 other fields	High correlation
`length_LINE` is highly correlated with `length_rpt` and 3 other fields	High correlation
`length_SINE` is highly correlated with `block_len` and 2 other fields	High correlation
`length_DNA` is highly correlated with `block_len` and 1 other fields	High correlation
`length_LTR` is highly correlated with `block_len`	High correlation
`block_len` is highly correlated with `begin` and 7 other fields	High correlation
`per_DNA` is highly correlated with `length_DNA`	High correlation
`per_SINE` is highly correlated with `length_SINE` and 2 other fields	High correlation
`per_LTR` is highly correlated with `length_rpt` and 4 other fields	High correlation
`per_LINE` is highly correlated with `length_rpt` and 4 other fields	High correlation
`per_length` is highly correlated with `length_rpt` and 3 other fields	High correlation
`per_gene` is highly correlated with `length_gene`	High correlation
`chrom` is highly correlated with `length_rpt` and 7 other fields	High correlation
`begin` is highly correlated with `end`	High correlation
`end` is highly correlated with `begin`	High correlation
`length_gene` is highly correlated with `per_gene`	High correlation
`length_rpt` is highly correlated with `chrom` and 7 other fields	High correlation
`length_LINE` is highly correlated with `chrom` and 6 other fields	High correlation
`length_SINE` is highly correlated with `chrom` and 6 other fields	High correlation
`length_DNA` is highly correlated with `per_DNA` and 2 other fields	High correlation
`length_LTR` is highly correlated with `chrom` and 5 other fields	High correlation
`per_DNA` is highly correlated with `length_DNA` and 2 other fields	High correlation
`per_SINE` is highly correlated with `chrom` and 8 other fields	High correlation
`per_LTR` is highly correlated with `chrom` and 8 other fields	High correlation
`per_LINE` is highly correlated with `chrom` and 7 other fields	High correlation
`per_length` is highly correlated with `chrom` and 7 other fields	High correlation
`per_gene` is highly correlated with `length_gene`	High correlation
`length_gene` has 1012 (23.7%) zeros	Zeros
`length_LTR` has 90 (2.1%) zeros	Zeros
`per_gene` has 1012 (23.7%) zeros	Zeros

Reproduction

Analysis started	2022-02-23 12:49:16.171498
Analysis finished	2022-02-23 12:49:59.679621
Duration	43.51 seconds
Software version	pandas-profiling v3.1.0
Download configuration	config.json

chrom
Categorical

HIGH CORRELATION

Distinct	32
Distinct (%)	0.8%
Missing	0
Missing (%)	0.0%
Memory size	33.4 KiB

LR999924.1	171
LR999925.1	167
LR999926.1	164
LR999927.1	161
LR999928.1	161
Other values (27)	3438

Length

Max length	10
Median length	10
Mean length	10
Min length	10

Characters and Unicode

Total characters	0
Distinct characters	0
Distinct categories	0 ?
Distinct scripts	0 ?
Distinct blocks	0 ?

The Unicode Standard assigns character properties to each code point, which can be used to analyse textual variables.

Unique

Unique	0 ?
Unique (%)	0.0%

Sample

1st row	LR999924.1
2nd row	LR999924.1
3rd row	LR999924.1
4th row	LR999924.1
5th row	LR999924.1

Common Values

Value	Count	Frequency (%)
LR999924.1	171	4.0%
LR999925.1	167	3.9%
LR999926.1	164	3.8%
LR999927.1	161	3.8%
LR999928.1	161	3.8%
LR999929.1	160	3.8%
LR999930.1	158	3.7%
LR999931.1	156	3.7%
LR999932.1	155	3.6%
LR999933.1	153	3.6%
Other values (22)	2656	62.3%

Length

Histogram of lengths of the category

Value	Count	Frequency (%)
lr999924.1	171	4.0%
lr999925.1	167	3.9%
lr999926.1	164	3.8%
lr999927.1	161	3.8%
lr999928.1	161	3.8%
lr999929.1	160	3.8%
lr999930.1	158	3.7%
lr999931.1	156	3.7%
lr999932.1	155	3.6%
lr999933.1	153	3.6%
Other values (22)	2656	62.3%

Most occurring characters

Value	Count	Frequency (%)
No values found.

Most occurring categories

Value	Count	Frequency (%)
No values found.

Most frequent character per category

Most occurring scripts

Value	Count	Frequency (%)
No values found.

Most frequent character per script

Most occurring blocks

Value	Count	Frequency (%)
No values found.

Most frequent character per block

begin
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION

Distinct	171
Distinct (%)	4.0%
Missing	0
Missing (%)	0.0%
Infinite	0
Infinite (%)	0.0%
Mean	6916096.73

Minimum	1
Maximum	17000001
Zeros	0
Zeros (%)	0.0%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	1
5-th percentile	600001
Q1	3300001
median	6600001
Q3	10300001
95-th percentile	14200001
Maximum	17000001
Range	17000000
Interquartile range (IQR)	7000000

Descriptive statistics

Standard deviation	4271589.444
Coefficient of variation (CV)	0.6176300897
Kurtosis	-1.002387132
Mean	6916096.73
Median Absolute Deviation (MAD)	3500000
Skewness	0.2182060007
Sum	2.947640426 × 10¹⁰
Variance	1.824647637 × 10¹³
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
1	32	0.8%
4800001	32	0.8%
3400001	32	0.8%
3500001	32	0.8%
3600001	32	0.8%
3700001	32	0.8%
3800001	32	0.8%
3900001	32	0.8%
4000001	32	0.8%
4100001	32	0.8%
Other values (161)	3942	92.5%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
1	32	0.8%
100001	32	0.8%
200001	32	0.8%
300001	32	0.8%
400001	32	0.8%
500001	32	0.8%
600001	32	0.8%
700001	32	0.8%
800001	32	0.8%
900001	32	0.8%

Value	Count	Frequency (%)
17000001	1	< 0.1%
16900001	1	< 0.1%
16800001	1	< 0.1%
16700001	1	< 0.1%
16600001	2	< 0.1%
16500001	2	< 0.1%
16400001	2	< 0.1%
16300001	3	0.1%
16200001	3	0.1%
16100001	3	0.1%

end
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION

Distinct	202
Distinct (%)	4.7%
Missing	0
Missing (%)	0.0%
Infinite	0
Infinite (%)	0.0%
Mean	7015715.099

Minimum	100000
Maximum	17040296
Zeros	0
Zeros (%)	0.0%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	100000
5-th percentile	700000
Q1	3400000
median	6700000
Q3	10400000
95-th percentile	14300000
Maximum	17040296
Range	16940296
Interquartile range (IQR)	7000000

Descriptive statistics

Standard deviation	4270989.261
Coefficient of variation (CV)	0.6087746154
Kurtosis	-1.003096817
Mean	7015715.099
Median Absolute Deviation (MAD)	3500000
Skewness	0.2178064853
Sum	2.990097775 × 10¹⁰
Variance	1.824134927 × 10¹³
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
100000	32	0.8%
4700000	32	0.8%
3400000	32	0.8%
3500000	32	0.8%
3600000	32	0.8%
3700000	32	0.8%
3800000	32	0.8%
3900000	32	0.8%
4000000	32	0.8%
4100000	32	0.8%
Other values (192)	3942	92.5%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
100000	32	0.8%
200000	32	0.8%
300000	32	0.8%
400000	32	0.8%
500000	32	0.8%
600000	32	0.8%
700000	32	0.8%
800000	32	0.8%
900000	32	0.8%
1000000	32	0.8%

Value	Count	Frequency (%)
17040296	1	< 0.1%
17000000	1	< 0.1%
16900000	1	< 0.1%
16800000	1	< 0.1%
16700000	1	< 0.1%
16607008	1	< 0.1%
16600000	2	< 0.1%
16500000	2	< 0.1%
16400000	2	< 0.1%
16362069	1	< 0.1%

length_gene
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
ZEROS

Distinct	2821
Distinct (%)	66.2%
Missing	0
Missing (%)	0.0%
Infinite	0
Infinite (%)	0.0%
Mean	3703.10488

Minimum	0
Maximum	26501
Zeros	1012
Zeros (%)	23.7%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	0
5-th percentile	0
Q1	202.25
median	2201.5
Q3	5627.5
95-th percentile	12723.3
Maximum	26501
Range	26501
Interquartile range (IQR)	5425.25

Descriptive statistics

Standard deviation	4351.954525
Coefficient of variation (CV)	1.175217734
Kurtosis	3.037885145
Mean	3703.10488
Median Absolute Deviation (MAD)	2201.5
Skewness	1.658515686
Sum	15782633
Variance	18939508.19
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
0	1012	23.7%
1164	5	0.1%
635	4	0.1%
2324	4	0.1%
488	4	0.1%
1180	4	0.1%
381	4	0.1%
1702	4	0.1%
2274	4	0.1%
683	4	0.1%
Other values (2811)	3213	75.4%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
0	1012	23.7%
9	1	< 0.1%
10	1	< 0.1%
11	1	< 0.1%
12	2	< 0.1%
15	1	< 0.1%
18	1	< 0.1%
20	1	< 0.1%
21	2	< 0.1%
22	1	< 0.1%

Value	Count	Frequency (%)
26501	1	< 0.1%
26157	1	< 0.1%
26038	1	< 0.1%
25794	1	< 0.1%
25601	1	< 0.1%
24430	1	< 0.1%
24376	1	< 0.1%
24126	1	< 0.1%
23849	1	< 0.1%
23845	1	< 0.1%

length_rpt
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION

Distinct	4083
Distinct (%)	95.8%
Missing	0
Missing (%)	0.0%
Infinite	0
Infinite (%)	0.0%
Mean	37262.81065

Minimum	0
Maximum	96531
Zeros	1
Zeros (%)	< 0.1%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	0
5-th percentile	17122.9
Q1	27134.25
median	36186.5
Q3	45876.75
95-th percentile	62368.35
Maximum	96531
Range	96531
Interquartile range (IQR)	18742.5

Descriptive statistics

Standard deviation	13751.65069
Coefficient of variation (CV)	0.3690449122
Kurtosis	0.2351532905
Mean	37262.81065
Median Absolute Deviation (MAD)	9365
Skewness	0.5243842441
Sum	158814099
Variance	189107896.6
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
43545	3	0.1%
28099	3	0.1%
37623	3	0.1%
42204	3	0.1%
29977	3	0.1%
42620	3	0.1%
40685	3	0.1%
24416	2	< 0.1%
21877	2	< 0.1%
27613	2	< 0.1%
Other values (4073)	4235	99.4%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
0	1	< 0.1%
742	1	< 0.1%
1488	1	< 0.1%
4945	1	< 0.1%
5120	1	< 0.1%
5403	1	< 0.1%
5876	1	< 0.1%
6190	1	< 0.1%
6194	1	< 0.1%
6507	1	< 0.1%

Value	Count	Frequency (%)
96531	1	< 0.1%
94811	1	< 0.1%
91118	1	< 0.1%
88807	1	< 0.1%
87795	1	< 0.1%
86135	1	< 0.1%
83678	1	< 0.1%
83463	1	< 0.1%
82260	1	< 0.1%
82074	1	< 0.1%

length_LINE
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION

Distinct	3885
Distinct (%)	91.2%
Missing	0
Missing (%)	0.0%
Infinite	0
Infinite (%)	0.0%
Mean	14882.06898

Minimum	0
Maximum	91264
Zeros	1
Zeros (%)	< 0.1%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	0
5-th percentile	5002.8
Q1	9295.5
median	13447
Q3	18548.75
95-th percentile	28284.85
Maximum	91264
Range	91264
Interquartile range (IQR)	9253.25

Descriptive statistics

Standard deviation	8604.772486
Coefficient of variation (CV)	0.5781973257
Kurtosis	10.77237867
Mean	14882.06898
Median Absolute Deviation (MAD)	4554.5
Skewness	2.375428347
Sum	63427378
Variance	74042109.54
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
18665	4	0.1%
13451	3	0.1%
22818	3	0.1%
12517	3	0.1%
14935	3	0.1%
10494	3	0.1%
21996	3	0.1%
10981	3	0.1%
13641	3	0.1%
16714	3	0.1%
Other values (3875)	4231	99.3%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
0	1	< 0.1%
320	1	< 0.1%
742	1	< 0.1%
872	1	< 0.1%
938	1	< 0.1%
1337	1	< 0.1%
1372	1	< 0.1%
1537	1	< 0.1%
1602	1	< 0.1%
1689	1	< 0.1%

Value	Count	Frequency (%)
91264	1	< 0.1%
86260	1	< 0.1%
84816	1	< 0.1%
81687	1	< 0.1%
81533	1	< 0.1%
79633	1	< 0.1%
74228	1	< 0.1%
67321	1	< 0.1%
66320	1	< 0.1%
66315	1	< 0.1%

length_SINE
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION

Distinct	3546
Distinct (%)	83.2%
Missing	1
Missing (%)	< 0.1%
Infinite	0
Infinite (%)	0.0%
Mean	7259.453884

Minimum	0
Maximum	19106
Zeros	24
Zeros (%)	0.6%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	0
5-th percentile	1528
Q1	4864
median	7279
Q3	9607
95-th percentile	12813
Maximum	19106
Range	19106
Interquartile range (IQR)	4743

Descriptive statistics

Standard deviation	3353.091747
Coefficient of variation (CV)	0.4618931121
Kurtosis	-0.4210047468
Mean	7259.453884
Median Absolute Deviation (MAD)	2375
Skewness	0.04376935262
Sum	30932533
Variance	11243224.26
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
0	24	0.6%
7818	4	0.1%
4877	4	0.1%
11800	4	0.1%
9867	4	0.1%
7472	4	0.1%
8544	4	0.1%
4901	4	0.1%
4452	3	0.1%
8456	3	0.1%
Other values (3536)	4203	98.6%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
0	24	0.6%
30	1	< 0.1%
38	1	< 0.1%
54	1	< 0.1%
55	1	< 0.1%
74	1	< 0.1%
87	1	< 0.1%
96	1	< 0.1%
104	1	< 0.1%
111	1	< 0.1%

Value	Count	Frequency (%)
19106	1	< 0.1%
17471	1	< 0.1%
17228	1	< 0.1%
17089	1	< 0.1%
16523	1	< 0.1%
16518	1	< 0.1%
16485	1	< 0.1%
16354	1	< 0.1%
16317	1	< 0.1%
16006	1	< 0.1%

length_DNA
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION

Distinct	3007
Distinct (%)	70.6%
Missing	0
Missing (%)	0.0%
Infinite	0
Infinite (%)	0.0%
Mean	3009.844205

Minimum	0
Maximum	28268
Zeros	14
Zeros (%)	0.3%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	0
5-th percentile	645
Q1	1648.25
median	2596
Q3	3822
95-th percentile	6507.9
Maximum	28268
Range	28268
Interquartile range (IQR)	2173.75

Descriptive statistics

Standard deviation	2139.228929
Coefficient of variation (CV)	0.710744073
Kurtosis	17.85873945
Mean	3009.844205
Median Absolute Deviation (MAD)	1064
Skewness	2.857204654
Sum	12827956
Variance	4576300.41
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
0	14	0.3%
2498	7	0.2%
1564	6	0.1%
2235	6	0.1%
2811	5	0.1%
3077	5	0.1%
2224	5	0.1%
2149	5	0.1%
3177	5	0.1%
1441	4	0.1%
Other values (2997)	4200	98.5%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
0	14	0.3%
11	1	< 0.1%
45	1	< 0.1%
50	3	0.1%
52	1	< 0.1%
64	1	< 0.1%
68	1	< 0.1%
72	2	< 0.1%
76	1	< 0.1%
77	1	< 0.1%

Value	Count	Frequency (%)
28268	1	< 0.1%
28168	1	< 0.1%
21690	1	< 0.1%
21290	1	< 0.1%
18699	1	< 0.1%
17606	1	< 0.1%
17090	1	< 0.1%
16905	1	< 0.1%
16709	1	< 0.1%
16435	1	< 0.1%

length_LTR
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
ZEROS

Distinct	2580
Distinct (%)	60.5%
Missing	0
Missing (%)	0.0%
Infinite	0
Infinite (%)	0.0%
Mean	2489.054904

Minimum	0
Maximum	30612
Zeros	90
Zeros (%)	2.1%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	0
5-th percentile	100
Q1	493
median	1021.5
Q3	2698
95-th percentile	9890.4
Maximum	30612
Range	30612
Interquartile range (IQR)	2205

Descriptive statistics

Standard deviation	3667.208483
Coefficient of variation (CV)	1.473333705
Kurtosis	11.03197296
Mean	2489.054904
Median Absolute Deviation (MAD)	665.5
Skewness	2.957214714
Sum	10608352
Variance	13448418.06
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
0	90	2.1%
471	8	0.2%
301	8	0.2%
431	7	0.2%
385	7	0.2%
105	7	0.2%
550	7	0.2%
165	7	0.2%
365	7	0.2%
475	6	0.1%
Other values (2570)	4108	96.4%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
0	90	2.1%
10	1	< 0.1%
12	1	< 0.1%
14	1	< 0.1%
15	1	< 0.1%
18	1	< 0.1%
19	2	< 0.1%
20	3	0.1%
22	2	< 0.1%
27	1	< 0.1%

Value	Count	Frequency (%)
30612	1	< 0.1%
29999	1	< 0.1%
28337	1	< 0.1%
27196	1	< 0.1%
26948	1	< 0.1%
26589	1	< 0.1%
26257	1	< 0.1%
25281	1	< 0.1%
25125	1	< 0.1%
24787	1	< 0.1%

block_len
Real number (ℝ_≥0)

HIGH CORRELATION

Distinct	33
Distinct (%)	0.8%
Missing	0
Missing (%)	0.0%
Infinite	0
Infinite (%)	0.0%
Mean	99618.36931

Minimum	790
Maximum	99999
Zeros	0
Zeros (%)	0.0%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	790
5-th percentile	99999
Q1	99999
median	99999
Q3	99999
95-th percentile	99999
Maximum	99999
Range	99209
Interquartile range (IQR)	0

Descriptive statistics

Standard deviation	5054.936551
Coefficient of variation (CV)	0.05074301643
Kurtosis	237.3472155
Mean	99618.36931
Median Absolute Deviation (MAD)	0
Skewness	-14.93793537
Sum	424573490
Variance	25552383.53
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=33)

Value	Count	Frequency (%)
99999	4230	99.2%
19297	1	< 0.1%
79296	1	< 0.1%
78467	1	< 0.1%
62368	1	< 0.1%
39933	1	< 0.1%
60136	1	< 0.1%
99260	1	< 0.1%
26782	1	< 0.1%
4086	1	< 0.1%
Other values (23)	23	0.5%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
790	1	< 0.1%
4086	1	< 0.1%
5405	1	< 0.1%
7007	1	< 0.1%
15212	1	< 0.1%
15998	1	< 0.1%
16382	1	< 0.1%
19297	1	< 0.1%
26760	1	< 0.1%
26782	1	< 0.1%

Value	Count	Frequency (%)
99999	4230	99.2%
99260	1	< 0.1%
96560	1	< 0.1%
94673	1	< 0.1%
90550	1	< 0.1%
79296	1	< 0.1%
78467	1	< 0.1%
74368	1	< 0.1%
74035	1	< 0.1%
72523	1	< 0.1%

per_DNA
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION

Distinct	3015
Distinct (%)	70.7%
Missing	0
Missing (%)	0.0%
Infinite	0
Infinite (%)	0.0%
Mean	3.017447978

Minimum	0
Maximum	28.26828268
Zeros	14
Zeros (%)	0.3%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	0
5-th percentile	0.6520565206
Q1	1.656266563
median	2.59802598
Q3	3.824788248
95-th percentile	6.536765368
Maximum	28.26828268
Range	28.26828268
Interquartile range (IQR)	2.168521685

Descriptive statistics

Standard deviation	2.143907978
Coefficient of variation (CV)	0.7105037081
Kurtosis	17.71547502
Mean	3.017447978
Median Absolute Deviation (MAD)	1.064510645
Skewness	2.852493441
Sum	12860.36328
Variance	4.596341417
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
0	14	0.3%
2.49802498	7	0.2%
1.56401564	6	0.1%
2.23502235	6	0.1%
3.07703077	5	0.1%
2.81102811	5	0.1%
2.22402224	5	0.1%
3.17703177	5	0.1%
2.14902149	5	0.1%
2.31702317	4	0.1%
Other values (3005)	4200	98.5%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
0	14	0.3%
0.01100011	1	< 0.1%
0.04500045	1	< 0.1%
0.05000050001	2	< 0.1%
0.05200052001	1	< 0.1%
0.06400064001	1	< 0.1%
0.06800068001	1	< 0.1%
0.07200072001	2	< 0.1%
0.07600076001	1	< 0.1%
0.07700077001	1	< 0.1%

Value	Count	Frequency (%)
28.26828268	1	< 0.1%
28.16828168	1	< 0.1%
21.6902169	1	< 0.1%
21.2902129	1	< 0.1%
18.69918699	1	< 0.1%
17.60617606	1	< 0.1%
17.0901709	1	< 0.1%
16.90516905	1	< 0.1%
16.70916709	1	< 0.1%
16.43516435	1	< 0.1%

per_SINE
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION

Distinct	3717
Distinct (%)	87.2%
Missing	1
Missing (%)	< 0.1%
Infinite	0
Infinite (%)	0.0%
Mean	10.28151654

Minimum	0
Maximum	28.61428614
Zeros	9
Zeros (%)	0.2%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	0
5-th percentile	3.81103811
Q1	7.268072681
median	10.04410044
Q3	13.10713107
95-th percentile	17.53117531
Maximum	28.61428614
Range	28.61428614
Interquartile range (IQR)	5.839058391

Descriptive statistics

Standard deviation	4.242424275
Coefficient of variation (CV)	0.4126263143
Kurtosis	0.1627838444
Mean	10.28151654
Median Absolute Deviation (MAD)	2.88302883
Skewness	0.3464568187
Sum	43809.54198
Variance	17.99816373
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
0	9	0.2%
8.625086251	4	0.1%
13.19213192	4	0.1%
8.900089001	4	0.1%
11.73511735	4	0.1%
7.626076261	3	0.1%
10.55510555	3	0.1%
11.5801158	3	0.1%
10.88110881	3	0.1%
10.84410844	3	0.1%
Other values (3707)	4221	99.0%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
0	9	0.2%
0.05000050001	1	< 0.1%
0.07200072001	1	< 0.1%
0.17500175	1	< 0.1%
0.1866925547	1	< 0.1%
0.24100241	1	< 0.1%
0.2500025	1	< 0.1%
0.34500345	1	< 0.1%
0.41200412	1	< 0.1%
0.48200482	1	< 0.1%

Value	Count	Frequency (%)
28.61428614	1	< 0.1%
28.33228332	1	< 0.1%
27.32727327	1	< 0.1%
27.30227302	1	< 0.1%
26.87326873	1	< 0.1%
25.27425274	1	< 0.1%
25.00125001	1	< 0.1%
24.98424984	1	< 0.1%
24.7102471	1	< 0.1%
24.52524525	1	< 0.1%

per_LTR
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION

Distinct	3835
Distinct (%)	90.0%
Missing	1
Missing (%)	< 0.1%
Infinite	0
Infinite (%)	0.0%
Mean	12.80545063

Minimum	0
Maximum	60.36379547
Zeros	4
Zeros (%)	0.1%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	0
5-th percentile	5.167051671
Q1	8.966089661
median	12.17312173
Q3	16.02416024
95-th percentile	22.27622276
Maximum	60.36379547
Range	60.36379547
Interquartile range (IQR)	7.058070581

Descriptive statistics

Standard deviation	5.39325079
Coefficient of variation (CV)	0.4211683716
Kurtosis	1.969924734
Mean	12.80545063
Median Absolute Deviation (MAD)	3.49103491
Skewness	0.7896843695
Sum	54564.02514
Variance	29.08715408
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
0	4	0.1%
10.54210542	4	0.1%
10.10710107	4	0.1%
10.39410394	4	0.1%
11.88611886	4	0.1%
11.74711747	3	0.1%
10.68210682	3	0.1%
9.354093541	3	0.1%
9.218092181	3	0.1%
10.69310693	3	0.1%
Other values (3825)	4226	99.2%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
0	4	0.1%
0.07200072001	1	< 0.1%
0.09400094001	1	< 0.1%
0.10300103	1	< 0.1%
0.1866925547	1	< 0.1%
0.24100241	1	< 0.1%
0.26200262	1	< 0.1%
0.4657801818	1	< 0.1%
0.6070060701	1	< 0.1%
1.10901109	1	< 0.1%

Value	Count	Frequency (%)
60.36379547	1	< 0.1%
37.94737947	1	< 0.1%
37.23737237	1	< 0.1%
35.10135101	1	< 0.1%
34.9503495	1	< 0.1%
34.61334613	1	< 0.1%
33.94333943	1	< 0.1%
33.75633756	1	< 0.1%
33.68533685	1	< 0.1%
33.16433164	1	< 0.1%

per_LINE
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION

Distinct	4039
Distinct (%)	94.8%
Missing	1
Missing (%)	< 0.1%
Infinite	0
Infinite (%)	0.0%
Mean	27.78898948

Minimum	0
Maximum	92.24450955
Zeros	1
Zeros (%)	< 0.1%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	0
5-th percentile	11.61411614
Q1	19.27519275
median	26.39826398
Q3	34.63734637
95-th percentile	48.68648686
Maximum	92.24450955
Range	92.24450955
Interquartile range (IQR)	15.36215362

Descriptive statistics

Standard deviation	12.03590237
Coefficient of variation (CV)	0.4331176697
Kurtosis	2.025386464
Mean	27.78898948
Median Absolute Deviation (MAD)	7.567075671
Skewness	1.037073135
Sum	118408.8842
Variance	144.8629458
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
23.86123861	3	0.1%
14.21814218	3	0.1%
28.8602886	3	0.1%
20.5302053	3	0.1%
28.92528925	3	0.1%
17.73717737	3	0.1%
26.78426784	3	0.1%
21.92521925	3	0.1%
35.12235122	3	0.1%
32.41632416	3	0.1%
Other values (4029)	4231	99.3%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
0	1	< 0.1%
2.04702047	1	< 0.1%
2.6900269	1	< 0.1%
3.37303373	1	< 0.1%
3.56603566	1	< 0.1%
4.06804068	1	< 0.1%
4.14704147	1	< 0.1%
4.25204252	1	< 0.1%
4.42704427	1	< 0.1%
4.49704497	1	< 0.1%

Value	Count	Frequency (%)
92.24450955	1	< 0.1%
91.50591506	1	< 0.1%
88.3402312	1	< 0.1%
86.64886649	1	< 0.1%
86.36386364	1	< 0.1%
84.91084911	1	< 0.1%
82.29482295	1	< 0.1%
81.79581796	1	< 0.1%
78.25878259	1	< 0.1%
76.75376754	1	< 0.1%

per_length
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION

Distinct	4087
Distinct (%)	95.9%
Missing	0
Missing (%)	0.0%
Infinite	0
Infinite (%)	0.0%
Mean	37.44999224

Minimum	0
Maximum	96.85974006
Zeros	1
Zeros (%)	< 0.1%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	0
5-th percentile	17.32922329
Q1	27.26452265
median	36.31636316
Q3	46.08146081
95-th percentile	62.6498265
Maximum	96.85974006
Range	96.85974006
Interquartile range (IQR)	18.81693817

Descriptive statistics

Standard deviation	13.80270056
Coefficient of variation (CV)	0.3685635091
Kurtosis	0.3122330378
Mean	37.44999224
Median Absolute Deviation (MAD)	9.364593646
Skewness	0.5650704772
Sum	159611.8669
Variance	190.5145427
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
42.20442204	3	0.1%
37.62337623	3	0.1%
28.09928099	3	0.1%
40.68540685	3	0.1%
42.6204262	3	0.1%
29.97729977	3	0.1%
43.54543545	3	0.1%
26.1402614	2	< 0.1%
58.96558966	2	< 0.1%
51.06751068	2	< 0.1%
Other values (4077)	4235	99.4%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
0	1	< 0.1%
4.94504945	1	< 0.1%
5.120051201	1	< 0.1%
5.876058761	1	< 0.1%
6.194061941	1	< 0.1%
6.507065071	1	< 0.1%
6.691066911	1	< 0.1%
6.898068981	1	< 0.1%
7.857078571	1	< 0.1%
8.130081301	1	< 0.1%

Value	Count	Frequency (%)
96.85974006	1	< 0.1%
96.53196532	1	< 0.1%
94.81194812	1	< 0.1%
91.11891119	1	< 0.1%
88.80788808	1	< 0.1%
88.3402312	1	< 0.1%
87.79587796	1	< 0.1%
86.13586136	1	< 0.1%
83.67883679	1	< 0.1%
83.46383464	1	< 0.1%

per_gene
Real number (ℝ_≥0)

HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
HIGH CORRELATION
ZEROS

Distinct	2828
Distinct (%)	66.4%
Missing	0
Missing (%)	0.0%
Infinite	0
Infinite (%)	0.0%
Mean	3.714060184

Minimum	0
Maximum	26.50126501
Zeros	1012
Zeros (%)	23.7%
Negative	0
Negative (%)	0.0%
Memory size	33.4 KiB

Quantile statistics

Minimum	0
5-th percentile	0
Q1	0.20300203
median	2.20902209
Q3	5.653556536
95-th percentile	12.73742737
Maximum	26.50126501
Range	26.50126501
Interquartile range (IQR)	5.450554506

Descriptive statistics

Standard deviation	4.358827368
Coefficient of variation (CV)	1.173601706
Kurtosis	2.99931233
Mean	3.714060184
Median Absolute Deviation (MAD)	2.20902209
Skewness	1.650159454
Sum	15829.3245
Variance	18.99937602
Monotonicity	Not monotonic

Histogram with fixed size bins (bins=50)

Value	Count	Frequency (%)
0	1012	23.7%
1.16401164	5	0.1%
0.48800488	4	0.1%
0.38100381	4	0.1%
1.70201702	4	0.1%
1.1800118	4	0.1%
2.32402324	4	0.1%
0.6350063501	4	0.1%
0.6830068301	4	0.1%
2.27402274	4	0.1%
Other values (2818)	3213	75.4%

Minimum 5 values
Maximum 5 values

Value	Count	Frequency (%)
0	1012	23.7%
0.009000090001	1	< 0.1%
0.0100001	1	< 0.1%
0.01100011	1	< 0.1%
0.01200012	2	< 0.1%
0.01500015	1	< 0.1%
0.01800018	1	< 0.1%
0.0200002	1	< 0.1%
0.02100021	2	< 0.1%
0.02200022	1	< 0.1%

Value	Count	Frequency (%)
26.50126501	1	< 0.1%
26.15726157	1	< 0.1%
26.03826038	1	< 0.1%
25.79425794	1	< 0.1%
25.60125601	1	< 0.1%
24.4302443	1	< 0.1%
24.37624376	1	< 0.1%
24.12624126	1	< 0.1%
23.84923849	1	< 0.1%
23.84523845	1	< 0.1%

Spearman's ρ

The Spearman's rank correlation coefficient (ρ) is a measure of monotonic correlation between two variables, and is therefore better in catching nonlinear monotonic correlations than Pearson's r. It's value lies between -1 and +1, -1 indicating total negative monotonic correlation, 0 indicating no monotonic correlation and 1 indicating total positive monotonic correlation.

To calculate ρ for two variables X and Y, one divides the covariance of the rank variables of X and Y by the product of their standard deviations.

Pearson's r

The Pearson's correlation coefficient (r) is a measure of linear correlation between two variables. It's value lies between -1 and +1, -1 indicating total negative linear correlation, 0 indicating no linear correlation and 1 indicating total positive linear correlation. Furthermore, r is invariant under separate changes in location and scale of the two variables, implying that for a linear function the angle to the x-axis does not affect r.

To calculate r for two variables X and Y, one divides the covariance of X and Y by the product of their standard deviations.

Kendall's τ

Similarly to Spearman's rank correlation coefficient, the Kendall rank correlation coefficient (τ) measures ordinal association between two variables. It's value lies between -1 and +1, -1 indicating total negative correlation, 0 indicating no correlation and 1 indicating total positive correlation.

To calculate τ for two variables X and Y, one determines the number of concordant and discordant pairs of observations. τ is given by the number of concordant pairs minus the discordant pairs divided by the total number of pairs.

Phik (φk)

Phik (φk) is a new and practical correlation coefficient that works consistently between categorical, ordinal and interval variables, captures non-linear dependency and reverts to the Pearson correlation coefficient in case of a bivariate normal input distribution. There is extensive documentation available here.

A simple visualization of nullity by column.

Nullity matrix is a data-dense display which lets you quickly visually pick out patterns in data completion.

The correlation heatmap measures nullity correlation: how strongly the presence or absence of one variable affects the presence of another.

The dendrogram allows you to more fully correlate variable completion, revealing trends deeper than the pairwise ones visible in the correlation heatmap.

First rows

	chrom	begin	end	length_gene	length_rpt	length_LINE	length_SINE	length_DNA	length_LTR	block_len	per_DNA	per_SINE	per_LTR	per_LINE	per_length	per_gene
0	LR999924.1	1	100000	6807	87795.0	81533.0	0.0	50	212.0	99999	0.050001	0.050001	0.262003	81.795818	87.795878	6.807068
1	LR999924.1	100001	200000	12634	34898.0	16750.0	2711.0	4085	1215.0	99999	4.085041	6.796068	8.011080	24.761248	34.898349	12.634126
2	LR999924.1	200001	300000	25794	10577.0	3534.0	1514.0	809	601.0	99999	0.809008	2.323023	2.924029	6.458065	10.577106	25.794258
3	LR999924.1	300001	400000	2683	15688.0	6128.0	3287.0	2835	105.0	99999	2.835028	6.122061	6.227062	12.355124	15.688157	2.683027
4	LR999924.1	400001	500000	7343	13046.0	4109.0	2529.0	1481	0.0	99999	1.481015	4.010040	4.010040	8.119081	13.046130	7.343073
5	LR999924.1	500001	600000	6706	16456.0	5859.0	4461.0	293	357.0	99999	0.293003	4.754048	5.111051	10.970110	16.456165	6.706067
6	LR999924.1	600001	700000	0	24316.0	10325.0	5439.0	2210	798.0	99999	2.210022	7.649076	8.447084	18.772188	24.316243	0.000000
7	LR999924.1	700001	800000	10256	18682.0	6959.0	3697.0	1695	0.0	99999	1.695017	5.392054	5.392054	12.351124	18.682187	10.256103
8	LR999924.1	800001	900000	5638	22796.0	6732.0	4262.0	3259	1122.0	99999	3.259033	7.521075	8.643086	15.375154	22.796228	5.638056
9	LR999924.1	900001	1000000	2532	27620.0	7654.0	6879.0	4290	686.0	99999	4.290043	11.169112	11.855119	19.509195	27.620276	2.532025

Last rows

	chrom	begin	end	length_gene	length_rpt	length_LINE	length_SINE	length_DNA	length_LTR	block_len	per_DNA	per_SINE	per_LTR	per_LINE	per_length	per_gene
4252	LR999955.1	5200001	5300000	2569	54826.0	18955.0	11045.0	6506	1261.0	99999	6.506065	17.551176	18.812188	37.767378	54.826548	2.569026
4253	LR999955.1	5300001	5400000	8707	58502.0	17374.0	8331.0	6842	9333.0	99999	6.842068	15.173152	24.506245	41.880419	58.502585	8.707087
4254	LR999955.1	5400001	5500000	2933	58354.0	21659.0	9106.0	6264	2985.0	99999	6.264063	15.370154	18.355184	40.014400	58.354584	2.933029
4255	LR999955.1	5500001	5600000	1921	43907.0	15371.0	11011.0	2563	800.0	99999	2.563026	13.574136	14.374144	29.745297	43.907439	1.921019
4256	LR999955.1	5600001	5700000	8638	54464.0	16233.0	10521.0	6261	3831.0	99999	6.261063	16.782168	20.613206	36.846368	54.464545	8.638086
4257	LR999955.1	5700001	5800000	1107	69323.0	32035.0	10528.0	5130	7569.0	99999	5.130051	15.658157	23.227232	55.262553	69.323693	1.107011
4258	LR999955.1	5800001	5900000	3029	69397.0	21158.0	9324.0	1876	8124.0	99999	1.876019	11.200112	19.324193	40.482405	69.397694	3.029030
4259	LR999955.1	5900001	6000000	164	66234.0	21179.0	746.0	4679	11839.0	99999	4.679047	5.425054	17.264173	38.443384	66.234662	0.164002
4260	LR999955.1	6000001	6100000	0	51067.0	17755.0	2374.0	2101	8154.0	99999	2.101021	4.475045	12.629126	30.384304	51.067511	0.000000
4261	LR999955.1	6100001	6166334	164	42720.0	13392.0	267.0	2778	9509.0	66333	4.187961	4.590475	18.925723	39.114769	64.402334	0.247237

Overview

Variables

Common Values

Length

Most occurring characters

Most occurring categories

Most frequent character per category

Most occurring scripts

Most frequent character per script

Most occurring blocks

Most frequent character per block

Interactions

Correlations

Spearman's ρ

Pearson's r

Kendall's τ

Phik (φk)

Missing values

Sample

First rows

Last rows